Name: Shewanella putrefaciens 95
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14054

Type strain:

Species: Shewanella putrefaciens

Strain Designation: 95

Culture col. no.: DSM 6067, ATCC 8071, ICPB 352, NCIB 10471, CCUG 13452 D, JCM 20190, CCUG 13452, CECT 331, CIP 80.40, IAM 12079, IAM 1509, IFO 3908, JCM 9294, LMG 2268, NBRC 3908, NCIMB 10471, NCTC 12960

Strain history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 12-80, Alteromonas putrefaciens <- ATCC <- B.W. Hammer: strain 95, Pseudomonas putrefaciens

NCBI tax ID(s): 1236543 (strain), 24 (species)

SI-ID 4969

LMG 2268, ATCC 8071, CCUG 13452, CECT 331, IAM 12079, IAM 1509, IFO 3908, NCIB 10471, CCUG 13452 D, DSM 6067, JCM 9294, NCIMB 10471, CCRC 10596, KCTC 2684, CECT 5346, NBRC 3908, CFBP 3033, CFBP 3034, NCTC 12960, BCRC 10596, CCT 0571, KCTC 12458, BCRC 17326, CCRC 17326, CNCTC 5277, JCM 20190, VTT E-95586, CIP 80.40

Other strains from Shewanella putrefaciens

Section

Shewanella putrefaciens 95 is an aerobe, mesophilic, motile human pathogen that was isolated from Butter.

motile
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella putrefaciens**
	Full Scientific Name (LPSN)	Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonym

Alteromonas putrefaciens

Information on morphological and physiological properties Morphology

[Ref.: #122075]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #122075]	Cell shape	rod-shaped

[Ref.: #122075]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.494

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2428]

Culture medium

NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)

[Ref.: #2428]

Culture medium growth

[Ref.: #2428]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2428]

Culture medium composition

expand / minimize

[Ref.: #2428]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #2428]

Culture medium growth

[Ref.: #2428]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2428]

Culture medium composition

expand / minimize

[Ref.: #37718]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37718]

Culture medium growth

[Ref.: #37718]

Culture medium composition

expand / minimize

[Ref.: #122075]

Culture medium

CIP Medium 72

[Ref.: #122075]

Culture medium growth

[Ref.: #122075]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2428]		growth	26 °C
[Ref.: #37718]		growth	25 °C
[Ref.: #45954]		growth	30-37 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122075]		growth	25-37 °C
[Ref.: #122075]	no	growth	5 °C
[Ref.: #122075]	no	growth	41 °C
[Ref.: #122075]	no	growth	45 °C

[Ref.: #2428]	Temperature range	mesophilic
[Ref.: #37718]	Temperature range	mesophilic
[Ref.: #45954]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122075]	Temperature range	mesophilic
[Ref.: #122075]	Temperature range	psychrophilic
[Ref.: #122075]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45954]	Oxygen tolerance	aerobe
[Ref.: #122075]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122075]	nitrate ChEBI	+	reduction
[Ref.: #122075]	nitrate ChEBI	+	respiration
[Ref.: #122075]	nitrite ChEBI	+	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122075]	sodium thiosulfate ChEBI	+	builds gas from
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122075]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122075]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122075]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122075]	caseinase	+	3.4.21.50
[Ref.: #122075]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #122075]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122075]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122075]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122075]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122075]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #122075]	oxidase	+
[Ref.: #122075]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122075]	tween esterase	-
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122075]	12249	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122075]	3427	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122075]	13451	-	+	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #45954]	Sample type/isolated from	Butter

[Ref.: #67770]	Sample type/isolated from	Butter

[Ref.: #122075]	Sample type/isolated from	Surface of tainted butter
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X81623 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	6

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2428]	Pathogenicity (human)	yes
[Ref.: #2428]	Pathogenicity (animal)	yes
[Ref.: #2428]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122075]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Shewanella putrefaciens strain ATCC 8071 16S ribosomal RNA gene, partial sequence	FJ971881	797	ENA	24 tax ID	*
[Ref.: #20218]	S.putrefaciens 16S rRNA gene (ATCC 8071)	X82133	1436	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014563	374	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014564	477	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014565	326	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014566	794	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014567	947	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrifaciens 16S rRNA	D11190	165	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrifaciens 16S rRNA	D11239	212	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrifaciens 16S rRNA	D11288	191	ENA	24 tax ID	*
[Ref.: #20218]	S.putrefaciens 16S rRNA gene	X81623	1536	ENA	24 tax ID	*
[Ref.: #20218]	Shewanella putrefaciens gene for 16S rRNA, partial sequence, strain: NBRC 3908	AB680167	1433	ENA	24 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Shewanella putrefaciens JCM 20190 = NBRC 3908	GCA_000615005	contig	GenBank	1236543 tax ID
[Ref.: #67770]	Shewanella putrefaciens JCM 20190 = NBRC 3908	GCA_001591325	contig	GenBank	1236543 tax ID
[Ref.: #67770]	Shewanella putrefaciens JCM 20190	GCA_014647555	scaffold	GenBank	24 tax ID
[Ref.: #66792]	Shewanella putrefaciens JCM 20190 = NBRC 3908	1236543.4	wgs	PATRIC	1236543 tax ID	*
[Ref.: #66792]	Shewanella putrefaciens strain JCM 20190	24.42	wgs	PATRIC	24 tax ID	*
[Ref.: #66792]	Shewanella putrefaciens JCM 20190	2585427914	draft	JGI IMG/M	1236543 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella putrefaciens ATCC 8071 NCBI: GCA_016406325.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella putrefaciens ATCC 8071 NCBI: GCA_016406325.1
[Ref.: #69480]	flagellated	yes	91.044	no
[Ref.: #69480]	gram-positive	no	98.848	no
[Ref.: #69480]	anaerobic	no	94.88	yes
[Ref.: #69480]	aerobic	yes	54.392	yes
[Ref.: #69480]	halophile	no	70.38	no
[Ref.: #69480]	spore-forming	no	95.728	no
[Ref.: #69480]	thermophile	no	99.595	yes
[Ref.: #69480]	glucose-util	yes	89.617	no
[Ref.: #69480]	motile	yes	94.075	no
[Ref.: #69480]	glucose-ferment	no	65.565	no

Availability in culture collections External links

[Ref.: #2428]

Culture collection no.

DSM 6067, ATCC 8071, ICPB 352, NCIB 10471, CCUG 13452 D, JCM 20190, CCUG 13452, CECT 331, CIP 80.40, IAM 12079, IAM 1509, IFO 3908, JCM 9294, LMG 2268, NBRC 3908, NCIMB 10471, NCTC 12960

[Ref.: #83223]

SI-ID 4969

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	How does organic matter constrain the nature, size and availability of Fe nanoparticles for biological reduction?	Pedrot M, Le Boudec A, Davranche M, Dia A, Henin O	J Colloid Interface Sci	10.1016/j.jcis.2011.03.067	2011	*
Phylogeny	Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea.	Satomi M, Vogel BF, Gram L, Venkateswaran K	Int J Syst Evol Microbiol	10.1099/ijs.0.63931-0	2006	*
Phylogeny	Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant.	Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G	Int J Syst Evol Microbiol	10.1099/ijs.0.63157-0	2005	*
Biotechnology	New method for rapid and sensitive quantification of sulphide-producing bacteria in fish from arctic and temperate waters.	Skjerdal OT, Lorentzen G, Tryland I, Berg JD	Int J Food Microbiol	10.1016/j.ijfoodmicro.2003.11.016	2004	*
Phylogeny	Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis.	Vogel BF, Jorgensen K, Christensen H, Olsen JE, Gram L	Appl Environ Microbiol	10.1128/aem.63.6.2189-2199.1997	1997	*
Metabolism	[A simple method for differentiation of hydrogen sulfide-producing bacteria by the pH-dependent EDTA-sensitivity test].	Kida N, Matsuzaki M, Matsukawa A, Suzuki S, Ushiama N, Kawahara K, Taguchi F	Nihon Saikingaku Zasshi	10.3412/jsb.49.769	1994	*
Biotechnology	Production and specificity of poly- and monoclonal antibodies raised against Shewanella putrefaciens.	Fonnesbech B, Frokiaer H, Gram L, Jespersen CM	J Appl Bacteriol	10.1111/j.1365-2672.1993.tb05152.x	1993	*
Phylogeny	Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens.	Stenstrom IM, Molin G	J Appl Bacteriol	10.1111/j.1365-2672.1990.tb05226.x	1990	*
Phylogeny	Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens).	Wilkinson SG, Caudwell PF	J Gen Microbiol	10.1099/00221287-118-2-329	1980	*
Metabolism	Study on spoilage potential and its molecular basis of Shewanella putrefaciens in response to cold conditions by Label-free quantitative proteomic analysis.	Qian YF, Cheng Y, Xie J, Yang SP	World J Microbiol Biotechnol	10.1007/s11274-022-03479-y	2022	*
Phylogeny	Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss).	Altun S, Duman M, Ay H, Saticioglu IB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005460	2022	*
Phylogeny	Shewanella azerbaijanica sp. nov. a novel aquatic species with high bioremediation abilities.	Nouioui I, Tarhriz V, Kim HM, Montazersaheb S, Hejazi MA, Jeon CO, Klenk HP, Hejazi MS	Arch Microbiol	10.1007/s00203-022-03112-4	2022	*
	Antimicrobial Effect of Epigallocatechin Gallate Against Shewanella putrefaciens ATCC 8071: A Study Based on Cell Membrane and Biofilm.	Pei J, Yu H, Qiu W, Mei J, Xie J	Curr Microbiol	10.1007/s00284-022-02978-3	2022	*

References

#2428

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37718 ; Curators of the CIP;
#45954 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13452 D

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83223

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4969.1 )

#122075 Collection of Institut Pasteur ; Curators of the CIP; CIP 80.40
* These data were automatically processed and therefore are not curated

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Shewanella putrefaciens ATCC 8071

Shewanella putrefaciens ATCC 8071

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