Name: Rhodocyclus tenuis 2761
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13926

Type strain:

Species: Rhodocyclus tenuis

Strain Designation: 2761

Culture col. no.: DSM 109, ATCC 25093, Pfennig 2761

Strain history: <- N. Pfennig, 2761

NCBI tax ID(s): 1188245 (strain), 1066 (species)

SI-ID 13837

LMG 4367, ATCC 19134, ATCC 25093, DSM 109, LMG 7825, NCIMB 13340, CECT 5770, NBRC 102472

Other strains from Rhodocyclus tenuis

R. tenuis 3761, DSM 111, Pfennig 3761
R. tenuis 3661, DSM 112, Pfennig 3661

Section

Rhodocyclus tenuis 2761 is an anaerobe, mesophilic, motile bacterium that was isolated from forest pond.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Rhodocyclaceae*
	Genus	*Rhodocyclus*
	Species	**Rhodocyclus tenuis**
	Full Scientific Name (LPSN)	Rhodocyclus tenuis (Pfennig 1969) Imhoff et al. 1984

Synonym

Rhodospirillum tenue

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	yes Confidence in %98.608

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2081]

Culture medium

RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)

[Ref.: #2081]

Culture medium growth

[Ref.: #2081]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2081]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2081]			growth	25 °C

[Ref.: #2081]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2081]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2081]	Sample type/isolated from	forest pond
[Ref.: #2081]	Geographic location (country and/or sea, region)	Grünenplan
[Ref.: #2081]	Country	Germany
[Ref.: #2081]	Country ISO 3 Code	DEU
[Ref.: #2081]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Pond (small)
#Environmental	#Terrestrial	#Forest

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D16208 (>99% sequence identity) for Rhodocyclus tenuis subclade from Microbeatlas

Aquatic Samples	70
Soil Samples	29
Animal Samples	10
Plant Samples	3
Total Samples	112

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2081]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2081]	Rhodocyclus tenuis gene for 16S ribosomal RNA, partial sequence, strain: DSM109	D16208	1460	ENA	1188245 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodocyclus tenuis 2761	GCA_014197755	scaffold	GenBank	1066 tax ID	*
[Ref.: #66792]	Rhodocyclus tenuis strain Pfennig 2761	1066.6	wgs	PATRIC	1066 tax ID	*
[Ref.: #66792]	Rhodocyclus tenuis DSM 109	2838095286	draft	JGI IMG/M	1066 tax ID	*
[Ref.: #66792]	Rhodocyclus tenuis 2761	GCA_009469755	contig	GenBank	1066 tax ID	*

[Ref.: #2081]

GC-content

64.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodocyclus tenuis 2761 NCBI: GCA_014197755.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodocyclus tenuis 2761 NCBI: GCA_014197755.1
[Ref.: #69480]	flagellated	yes	81.913	no
[Ref.: #69480]	gram-positive	no	99.22	no
[Ref.: #69480]	anaerobic	yes	96.914	yes
[Ref.: #69480]	aerobic	no	96.8	yes
[Ref.: #69480]	halophile	no	97.497	no
[Ref.: #69480]	spore-forming	no	93.336	no
[Ref.: #69480]	glucose-util	no	75.958	no
[Ref.: #69480]	thermophile	no	96.351	yes
[Ref.: #69480]	motile	yes	93.204	no
[Ref.: #69480]	glucose-ferment	no	88.56	no

Availability in culture collections External links

[Ref.: #2081]

Culture collection no.

DSM 109, ATCC 25093, Pfennig 2761

[Ref.: #83100]

SI-ID 13837

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative Genome Analysis of the Photosynthetic Betaproteobacteria of the Genus Rhodocyclus: Heterogeneity within Strains Assigned to Rhodocyclus tenuis and Description of Rhodocyclus gracilis sp. nov. as a New Species.	Kyndt JA, Aviles FA, Imhoff JF, Kunzel S, Neulinger SC, Meyer TE	Microorganisms	10.3390/microorganisms10030649	2022	*
Enzymology	The antenna complexes of the purple non-sulfur photosynthetic bacterium Rhodocyclus tenuis. Structural and spectral characterization.	Hu Q, Brunisholz RA, Frank G, Zuber H	Eur J Biochem	10.1111/j.1432-1033.1996.0381z.x	1996	*

References

#2081

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83100

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13837.1 )

* These data were automatically processed and therefore are not curated

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