Name: Propionivibrio limicola GolChi1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13899

Type strain:

Species: Propionivibrio limicola

Strain Designation: GolChi1

Culture col. no.: DSM 6832, JCM 12227

Strain history: <- A. Brune and B. Schink, GolChi1

NCBI tax ID(s): 167645 (species)

SI-ID 48302

DSM 6832, ATCC BAA-290, JCM 12227

Section

Propionivibrio limicola GolChi1 is an anaerobe, mesophilic, motile bacterium that was isolated from freshwater anoxic sediment.

motile
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Rhodocyclaceae*
	Genus	*Propionivibrio*
	Species	**Propionivibrio limicola**
	Full Scientific Name (LPSN)	Propionivibrio limicola Brune et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	yes Confidence in %98.325

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2843]

Culture medium

PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298)

[Ref.: #2843]

Culture medium growth

[Ref.: #2843]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2843]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2843]			growth	30 °C

[Ref.: #2843]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2843]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2843]	Sample type/isolated from	freshwater anoxic sediment
[Ref.: #2843]	Country	Germany
[Ref.: #2843]	Country ISO 3 Code	DEU
[Ref.: #2843]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Sediment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2843]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2843]	Propionivibrio limicola 16S rRNA gene, strain GolChi1 T	AJ307983	1531	ENA	167645 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Propionivibrio limicola GolChi1	GCA_009469695	contig	GenBank	167645 tax ID	*
[Ref.: #66792]	Propionivibrio limicola strain GolChi1	167645.3	wgs	PATRIC	167645 tax ID	*

[Ref.: #2843]

GC-content

61.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Propionivibrio limicola strain GolChi1 PATRIC: 167645.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Propionivibrio limicola strain GolChi1 PATRIC: 167645.3
[Ref.: #69480]	motile	yes	88.944	no
[Ref.: #69480]	gram-positive	no	99.395	no
[Ref.: #69480]	anaerobic	yes	97.082	yes
[Ref.: #69480]	aerobic	no	94.236	no
[Ref.: #69480]	halophile	no	96.594	no
[Ref.: #69480]	spore-forming	no	92.571	no
[Ref.: #69480]	glucose-util	no	58.92	no
[Ref.: #69480]	flagellated	yes	66.281	no
[Ref.: #69480]	thermophile	no	98.733	yes
[Ref.: #69480]	glucose-ferment	no	76.735	no

Availability in culture collections External links

[Ref.: #2843]

Culture collection no.

DSM 6832, JCM 12227

[Ref.: #83074]

SI-ID 48302

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Propionivibrio limicola sp. nov., a fermentative bacterium specialized in the degradation of hydroaromatic compounds, reclassification of Propionibacter pelophilus as Propionivibrio pelophilus comb. nov. and amended description of the genus Propionivibrio.	Brune A, Ludwig W, Schink B	Int J Syst Evol Microbiol	10.1099/00207713-52-2-441	2002	*

References

#2843

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6832

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83074

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48302.1 )

* These data were automatically processed and therefore are not curated

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Propionivibrio limicola strain GolChi1

Propionivibrio limicola strain GolChi1

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