Name: Propionivibrio pelophilus asp66
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13898

Type strain:

Species: Propionivibrio pelophilus

Strain Designation: asp66

Culture col. no.: DSM 12018

Strain history: <- T. A. Hansen, Univ. Groningen, The Netherlands; asp66 <- A. J. M. Stams {1982}

NCBI tax ID(s): 1123006 (strain), 65401 (species)

SI-ID 49222

DSM 12018, CIP 106101

Section

Propionivibrio pelophilus asp66 is an anaerobe, mesophilic bacterium that was isolated from anoxic sediment.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Rhodocyclaceae*
	Genus	*Propionivibrio*
	Species	**Propionivibrio pelophilus**
	Full Scientific Name (LPSN)	Propionivibrio pelophilus (Meijer et al. 1999) Brune et al. 2002

Synonym

Propionibacter pelophilus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4577]

Culture medium

ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)

[Ref.: #4577]

Culture medium growth

[Ref.: #4577]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4577]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4577]			growth	30 °C

[Ref.: #4577]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4577]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4577]	Sample type/isolated from	anoxic sediment
[Ref.: #4577]	Geographic location (country and/or sea, region)	Ems-Dollart
[Ref.: #4577]	Country	Netherlands
[Ref.: #4577]	Country ISO 3 Code	NLD
[Ref.: #4577]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sediment
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF016690 (>99% sequence identity) for Propionivibrio pelophilus subclade from Microbeatlas

Aquatic Samples	225
Soil Samples	6
Animal Samples	7
Plant Samples	1
Total Samples	239

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4577]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4577]	Propionibacter pelophilus 16S ribosomal RNA gene, complete sequence	AF016690	1485	ENA	65401 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Propionivibrio pelophilus DSM 12018	2574180451	draft	JGI IMG/M	1123006 tax ID	*

[Ref.: #4577]

GC-content

60.8 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4577]

Culture collection no.

DSM 12018

[Ref.: #83073]

SI-ID 49222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fermentative bacteria from estuarine mud: phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov.	Meijer WG, Nienhuis-Kuiper ME, Hansen TA	Int J Syst Bacteriol	10.1099/00207713-49-3-1039	1999	*

References

#4577

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12018

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83073

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49222.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Propionivibrio pelophilus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF