Name: Pseudomonas libanensis CCUG 43190
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13112

Type strain:

Species: Pseudomonas libanensis

Culture col. no.: CCUG 43190, DSM 17149, CCM 4841, CFML 96-195, CIP 105460

Strain history: CIP <- 1998, F. Dabboussi, Henri Warembourg Fac. Med., Lille, France: strain CFML 96-195

NCBI tax ID(s): 75588 (species)

SI-ID 69804

CIP 105460, CCUG 43190, CCM 4841, DSM 17149, CIP 10546, KACC 10809, NCIMB 13836, CFBP 4841

Section

Pseudomonas libanensis CCUG 43190 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from spring water.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas libanensis**
	Full Scientific Name (LPSN)	Pseudomonas libanensis Dabboussi et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #120591]	Gram stain	negative

[Ref.: #120591]	Cell shape	rod-shaped

[Ref.: #120591]	Motility	yes

[Ref.: #120591]	Pigment production	no
[Ref.: #120591]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6790]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6790]

Culture medium growth

[Ref.: #6790]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6790]

Culture medium composition

expand / minimize

[Ref.: #32714]

Culture medium

MEDIUM 29- Brain heart agar

[Ref.: #32714]

Culture medium growth

[Ref.: #32714]

Culture medium composition

expand / minimize

[Ref.: #120591]

Culture medium

CIP Medium 29

[Ref.: #120591]

Culture medium growth

[Ref.: #120591]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6790]		growth	28 °C
[Ref.: #32714]		growth	30 °C
[Ref.: #55716]		growth	30 °C
[Ref.: #120591]		growth	5-37 °C
[Ref.: #120591]	no	growth	41 °C

[Ref.: #6790]	Temperature range	mesophilic
[Ref.: #32714]	Temperature range	mesophilic
[Ref.: #55716]	Temperature range	mesophilic
[Ref.: #120591]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #55716]	Oxygen tolerance	aerobe
[Ref.: #120591]	Oxygen tolerance	obligate aerobe

	Salt	Tested relation		Salt conc.
[Ref.: #120591]	NaCl		growth	0-6	%
[Ref.: #120591]	NaCl	no	growth	8	%
[Ref.: #120591]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #120591]	citrate ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #120591]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #120591]	nitrate ChEBI	+	reduction
[Ref.: #120591]	nitrate ChEBI	+	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #120591]	nitrite ChEBI	-	reduction
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120591]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #120591]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #120591]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120591]	amylase	-
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #120591]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120591]	caseinase	+	3.4.21.50
[Ref.: #120591]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #120591]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120591]	gelatinase	+/-
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #120591]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120591]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120591]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #120591]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120591]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120591]	tryptophan deaminase	-
[Ref.: #120591]	tween esterase	-
[Ref.: #120591]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #6790]	23006	+	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	-	+	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120591]	1165	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	+	+	+	-	-	+	+	+	-	-	+	+	-	-	+	-	-	+	+	-	-	-	-	+	+	+	-	+	+	+	+	-	+	+	+	-	+	+	+	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	+	+	-	-	+	-	+	+	+	+	+	+	+	+	+	+	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120591]	8718	-	-	+	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6790]	Sample type/isolated from	spring water
[Ref.: #6790]	Country	Lebanon
[Ref.: #6790]	Country ISO 3 Code	LBN
[Ref.: #6790]	Continent	Asia

[Ref.: #55716]	Sample type/isolated from	Spring water
[Ref.: #55716]	Sampling date	1995
[Ref.: #55716]	Country	Lebanon
[Ref.: #55716]	Country ISO 3 Code	LBN
[Ref.: #55716]	Continent	Asia

[Ref.: #120591]	Sample type/isolated from	Environment, Spring water
[Ref.: #120591]	Country	Lebanon
[Ref.: #120591]	Country ISO 3 Code	LBN
[Ref.: #120591]	Continent	Asia
[Ref.: #120591]	Isolation date	1995
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF057645 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1631
Soil Samples	874
Animal Samples	3216
Plant Samples	2451
Total Samples	8172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6790]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120591]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6790]	Pseudomonas libaniensis 16S ribosomal RNA gene, complete sequence	AF057645	1516	ENA	75588 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas libanensis DSM 17149	GCA_001439685	contig	GenBank	75588 tax ID	*
[Ref.: #66792]	Pseudomonas libanensis strain DSM 17149	75588.4	wgs	PATRIC	75588 tax ID	*
[Ref.: #66792]	Pseudomonas libanensis DSM 17149	2636416169	draft	JGI IMG/M	75588 tax ID	*
[Ref.: #66792]	Pseudomonas libanensis DSM 17149	2700989493	draft	JGI IMG/M	75588 tax ID	*
[Ref.: #66792]	Pseudomonas libanensis DSM 17149	GCA_900101035	chromosome	GenBank	75588 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas libanensis DSM 17149 NCBI: GCA_900101035.1
[Ref.: #69480]	motile	yes	89.571	no
[Ref.: #69480]	flagellated	yes	79.392	no
[Ref.: #69480]	gram-positive	no	98.251	no
[Ref.: #69480]	anaerobic	no	98.241	yes
[Ref.: #69480]	aerobic	yes	95.147	yes
[Ref.: #69480]	halophile	no	92.618	no
[Ref.: #69480]	spore-forming	no	94.876	no
[Ref.: #69480]	glucose-ferment	no	89.44	no
[Ref.: #69480]	thermophile	no	99.852	yes
[Ref.: #69480]	glucose-util	yes	95.013	yes

Availability in culture collections External links

[Ref.: #6790]

Culture collection no.

CCUG 43190, DSM 17149, CCM 4841, CFML 96-195, CIP 105460

[Ref.: #82320]

SI-ID 69804

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas lactucae sp. nov., a pathogen causing bacterial rot of lettuce in Japan.	Sawada H, Fujikawa T, Satou M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004917	2021	*
Phylogeny	Pseudomonas carnis sp. nov., isolated from meat.	Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003928	2020	*
Phylogeny	Pseudomonas lactis sp. nov. and Pseudomonas paralactis sp. nov., isolated from bovine raw milk.	von Neubeck M, Huptas C, Gluck C, Krewinkel M, Stoeckel M, Stressler T, Fischer L, Hinrichs J, Scherer S, Wenning M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001836	2017	*
Phylogeny	Isolation, identification and characterization of a new lipolytic pseudomonas sp., strain AHD-1, from Tunisian soil.	Fendri I, Chaari A, Dhouib A, Jlassi B, Abousalham A, Carriere F, Sayadi S, Abdelkafi S	Environ Technol	10.1080/09593330903369994	2010	*
Phylogeny	Pseudomonas libanensis sp. nov., a new species isolated from Lebanese spring waters.	Dabboussi F, Hamze M, Elomari M, Verhille S, Baida N, Izard D, Leclerc H	Int J Syst Bacteriol	10.1099/00207713-49-3-1091	1999	*

References

#6790

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17149

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32714 ; Curators of the CIP;
#55716 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43190

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82320

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID69804.1 )

#120591 Collection of Institut Pasteur ; Curators of the CIP; CIP 105460
* These data were automatically processed and therefore are not curated

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Pseudomonas libanensis DSM 17149

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