Name: Pseudoalteromonas elyakovii 40MC
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131080

Type strain:

Species: Pseudoalteromonas elyakovii

Strain Designation: 40MC

Culture col. no.: DSM 12747, ATCC 700519, VKPM B 3905, CCUG 44496, KMM 162, CIP 105338, VKPM B3905

Strain history: CIP <- 1997, E. Ivanova, Sci. Acad., Vladivostok, Russia <- V.V. Mikhailov: strain 40MC

NCBI tax ID(s): 81037 (species)

SI-ID 10038

LMG 14908, ATCC 700519, CIP 105338, NCIMB 13703, CCUG 44496, DSM 12747

Other strains from Pseudoalteromonas elyakovii

P. elyakovii JCM 21269, IAM 14594, NBRC 103035

Section

Pseudoalteromonas elyakovii 40MC is an aerobe, psychrophilic, motile plant pathogen that was isolated from mussel .

motile
aerobe
plant pathogen
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas elyakovii**
	Full Scientific Name (LPSN)	Pseudoalteromonas elyakovii (Ivanova et al. 1997) Sawabe et al. 2000

Synonym

Alteromonas elyakovii

Information on morphological and physiological properties Morphology

[Ref.: #119021]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.992

[Ref.: #119021]	Cell shape	rod-shaped

[Ref.: #119021]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.568

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22372]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22372]

Culture medium growth

[Ref.: #22372]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22372]

Culture medium composition

expand / minimize

[Ref.: #42036]

Culture medium

Marine agar (MA)

[Ref.: #42036]

Culture medium growth

[Ref.: #42036]

Culture medium composition

expand / minimize

[Ref.: #119021]

Culture medium

CIP Medium 13

[Ref.: #119021]

Culture medium growth

[Ref.: #119021]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #22372]		growth	20 °C
[Ref.: #42036]		growth	25 °C
[Ref.: #56346]		growth	30 °C
[Ref.: #119021]		growth	5-30 °C
[Ref.: #119021]	no	growth	37 °C
[Ref.: #119021]	no	growth	41 °C

[Ref.: #22372]	Temperature range	psychrophilic
[Ref.: #42036]	Temperature range	mesophilic
[Ref.: #56346]	Temperature range	mesophilic
[Ref.: #119021]	Temperature range	mesophilic
[Ref.: #119021]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #56346]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

	Salt	Tested relation		Salt conc.
[Ref.: #119021]	NaCl		growth	2-8	%
[Ref.: #119021]	NaCl	no	growth	0	%
[Ref.: #119021]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119021]	esculin ChEBI	+	hydrolysis
[Ref.: #119021]	nitrate ChEBI	-	reduction
[Ref.: #119021]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119021]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119021]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119021]	amylase	+
[Ref.: #119021]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119021]	caseinase	+	3.4.21.50
[Ref.: #119021]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119021]	gelatinase	-
[Ref.: #119021]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119021]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119021]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119021]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119021]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119021]	tryptophan deaminase	-
[Ref.: #119021]	tween esterase	+
[Ref.: #119021]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #56346]

Fatty acid	Percentage	ECL
C16:1 ω7c	23.7	15.819
C16:0	13.5	16
C17:1 ω8c	11	16.792
C16:1 ω7c/C15:0 ISO 2OH	6.6	15.85
C15:0	6.5	15
C17:0	6.1	17
C15:1 ω8c	6	14.792
C17:1 ω7c	3.4	16.818
C12:0 3OH	3.3	13.455
C15:0 ISO 3OH	2.4	16.135
C18:1 ω7c /12t/9t	2.4	17.824
C15:1 ω6c	1.5	14.856
C12:0	1.5	12
Unidentified	1.4	16.299
C16:0 iso	1.2	15.626
C13:0 3OH/C15:1 i I/H	1	14.469
C11:0 3OH	1	12.441
Unidentified	0.8	12.78
C16:1 ω9c	0.8	15.774
C17:0 iso	0.7	16.629
C18:0	0.6	18
unknown 11.798	0.6	11.798
C12:0 ISO 3OH	0.6	13.098
C13:0 ISO 2OH	0.6	13.814
C13:0	0.6	13
C17:0 anteiso	0.5	16.722
C10:0 3OH	0.5	11.423
C14:0 ISO 3OH	0.5	15.117
C14:0	0.4	14
C18:1 ω9c	0.4	17.769

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119021]	1110	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119021]	8627	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22372]	Sample type/isolated from	mussel (Crenomytilus grayanus)
[Ref.: #22372]	Host species	Crenomytilus grayanus
[Ref.: #22372]	Geographic location (country and/or sea, region)	Peter the Great Bay
[Ref.: #22372]	Country	Russia
[Ref.: #22372]	Country ISO 3 Code	RUS
[Ref.: #22372]	Continent	Asia

[Ref.: #56346]	Sample type/isolated from	Far-East mussel,Crenomytilus grayanus
[Ref.: #56346]	Geographic location (country and/or sea, region)	Troitsa Bay (Peter the Great Bay)
[Ref.: #56346]	Country	Russia
[Ref.: #56346]	Country ISO 3 Code	RUS
[Ref.: #56346]	Continent	Asia

[Ref.: #119021]	Sample type/isolated from	Mussel, Crenomytilus grayanus
[Ref.: #119021]	Country	Sea of Japan
[Ref.: #119021]	Isolation date	1985
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF082562 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22372]	Pathogenicity (plant)	yes
[Ref.: #22372]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119021]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22372]	Alteromonas elyakovii 16S ribosomal RNA gene, partial sequence	AF082562	1494	ENA	81037 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas elyakovii ATCC 700519	81037.3	wgs	PATRIC	81037 tax ID	*
[Ref.: #66792]	Pseudoalteromonas elyakovii ATCC 700519	2627853893	draft	JGI IMG/M	81037 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas elyakovii ATCC 700519 PATRIC: 81037.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas elyakovii ATCC 700519 PATRIC: 81037.3
[Ref.: #69480]	motile	yes	92.102	no
[Ref.: #69480]	flagellated	yes	94.41	no
[Ref.: #69480]	gram-positive	no	99.127	no
[Ref.: #69480]	anaerobic	no	96.196	yes
[Ref.: #69480]	halophile	no	51.075	no
[Ref.: #69480]	spore-forming	no	94.43	no
[Ref.: #69480]	glucose-util	yes	90.407	no
[Ref.: #69480]	aerobic	yes	86.85	yes
[Ref.: #69480]	glucose-ferment	no	72.335	no
[Ref.: #69480]	thermophile	no	99.662	yes

Availability in culture collections External links

[Ref.: #22372]

Culture collection no.

DSM 12747, ATCC 700519, VKPM B 3905, CCUG 44496, KMM 162, CIP 105338, VKPM B3905

[Ref.: #89543]

SI-ID 10038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.	Al Khudary R, Stosser NI, Qoura F, Antranikian G	Int J Syst Evol Microbiol	10.1099/ijs.0.64963-0	2008	*
Phylogeny	Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.	Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen R	Int J Syst Evol Microbiol	10.1099/00207713-50-1-265	2000	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22372

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12747

#42036 ; Curators of the CIP;
#56346 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44496

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89543

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10038.1 )

#119021 Collection of Institut Pasteur ; Curators of the CIP; CIP 105338
* These data were automatically processed and therefore are not curated

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Pseudoalteromonas elyakovii ATCC 700519

Pseudoalteromonas elyakovii ATCC 700519

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