[Ref.: #3983] |
Sample type/isolated from |
Syringa vulgaris |
[Ref.: #3983] |
Host species |
Syringa vulgaris |
[Ref.: #3983] |
Country |
United Kingdom |
[Ref.: #3983] |
Country ISO 3 Code |
GBR |
[Ref.: #3983] |
Continent |
Europe |
|
[Ref.: #123401] |
Sample type/isolated from |
Syringa vulgaris |
* marker position based on {}
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Isolation sources categories |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #3983] |
Pseudomonas syringae pv. syringae strain NCPPB 281 16S ribosomal RNA gene, partial sequence |
DQ318866 |
1482 |
|
321 tax ID |
[Ref.: #20218] |
Pseudomonas syringae strain ATCC 19310 16S ribosomal RNA gene, partial sequence |
AF094749 |
1460 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae a41 16S ribosomal RNA gene, partial sequence |
AF311988 |
497 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae axB12 16S ribosomal RNA gene, partial sequence |
AF311989 |
489 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae partial 16S rRNA gene, type strain ICMP 3023T |
AJ308316 |
1371 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae 16S rRNA gene |
D84026 |
1454 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae strain ATCC 19310 16S ribosomal RNA gene, partial sequence |
FJ971872 |
793 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae pv. syringae culture-collection ICMP:3023 16S ribosomal RNA gene, partial sequence |
HM190217 |
1444 |
|
321 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae pv. syringae culture-collection LMG:1247 16S-23S ribosomal RNA intergenic spacer, partial sequence |
HM032080 |
526 |
|
321 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae pv. syringae culture-collection LMG:1247 16S-23S ribosomal RNA intergenic spacer, partial sequence |
HM032083 |
516 |
|
321 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae pv. syringae culture-collection LMG:1247 16S-23S ribosomal RNA intergenic spacer, partial sequence |
HM032084 |
517 |
|
321 tax ID |
* |
[Ref.: #20218] |
P.syringae 16S rRNA gene |
Z76669 |
1494 |
|
317 tax ID |
* |
[Ref.: #20218] |
Pseudomonas syringae pv. syringae strain NRRL B-1631 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY342181 |
532 |
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321 tax ID |
* |
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Availability in culture collections External links
[Ref.: #3983] |
Culture collection no. |
DSM 10604, ATCC 19310, ICMP 3023, ICPB PS255, NCPPB 281, CIP 106698, CCUG 14279, LMG 1247, DSM 6693, CRBIP 25.27, CCEB 760, PDDCC 3023 |
[Ref.: #82235] |
SI-ID 4542
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* |
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Literature: |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Genetics |
Genome sequence and comparative genome analysis of Pseudomonas syringae pv. syringae type strain ATCC 19310. |
Park YS, Jeong H, Sim YM, Yi HS, Ryu CM |
J Microbiol Biotechnol |
10.4014/jmb.1312.12082 |
2014 |
* |
Metabolism |
Surface display of GFP by Pseudomonas syringae truncated ice nucleation protein in attenuated Vibrio anguillarum strain. |
Xu Y, Liu Q, Zhou L, Yang Z, Zhang Y |
Mar Biotechnol (NY) |
10.1007/s10126-008-9108-7 |
2008 |
* |
Genetics |
Conservation of the gene for outer membrane protein OprF in the family Pseudomonadaceae: sequence of the Pseudomonas syringae oprF gene. |
Ullstrom CA, Siehnel R, Woodruff W, Steinbach S, Hancock RE |
J Bacteriol |
10.1128/jb.173.2.768-775.1991 |
1991 |
* |
Enzymology |
Cloning and regulation of Erwinia herbicola pigment genes. |
Perry KL, Simonitch TA, Harrison-Lavoie KJ, Liu ST |
J Bacteriol |
10.1128/jb.168.2.607-612.1986 |
1986 |
* |
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- References
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#3983 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 10604
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#36440 |
; Curators of the CIP;
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#66794 |
Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg:
BRENDA, the ELIXIR core data resource in 2021: new developments and updates.
Nucleic Acids Res. 49:
D498 - D508
2020 (
DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
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#68369 |
Automatically annotated from API 20NE .
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#68382 |
Automatically annotated from API zym .
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#69479 |
João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.:
MicrobeAtlas 1.0 beta
.
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#82235 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID4542.1 )
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#123401 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 106698
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- * These data were automatically processed and therefore are not curated
Change proposal
Successfully sent
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