[Ref.: #12606] |
Sample type/isolated from |
soil, enrichment with ethanol |
|
[Ref.: #44420] |
Sample type/isolated from |
Soil enriched with ethanol |
|
[Ref.: #67770] |
Sample type/isolated from |
Soil enrichment with ethanol as carbon source |
|
[Ref.: #120892] |
Sample type/isolated from |
Environment, Soil enriched with ethanol as carbon source |
* marker position based on {}
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Isolation sources categories |
#Environmental |
#Terrestrial |
#Soil |
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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
|
16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
|
|
Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #20218] |
Pseudomonas mendocina strain ATCC 25411 16S ribosomal RNA gene, partial sequence |
AF094734 |
1457 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina partial 16S rRNA gene, type strain ICMP 13540T |
AJ308310 |
1349 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene |
L28159 |
702 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene |
L28160 |
705 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene |
L28161 |
705 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S ribosomal RNA (16S rRNA) gene, transfer RNA-Ile (tRNA-Ile) gene, transfer RNA-Ala (tRNA-Ala) gene, 23S ribosomal RNA (23S rRNA) gene |
L28162 |
707 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S ribosomal RNA |
M59154 |
1490 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina strain BCRC 10458 16S-23S ribosomal RNA intergenic spacer, complete sequence |
EU014574 |
516 |
|
300 tax ID |
* |
[Ref.: #20218] |
P.mendocina (strain DSM 50017T) 16S rRNA gene |
Z76674 |
1451 |
|
300 tax ID |
* |
[Ref.: #20218] |
P.mendocina (strain LMG 1223T) 16S rRNA gene |
Z76664 |
1456 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina gene for 16S rRNA, partial sequence, strain: NBRC 14162 |
AB680570 |
1462 |
|
300 tax ID |
* |
[Ref.: #20218] |
Pseudomonas mendocina 16S rRNA gene, complete sequence |
D84016 |
1526 |
|
300 tax ID |
* |
|
|
Genome sequence information: |
|
|
Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
|
[Ref.: #66792] |
Pseudomonas mendocina NCTC10897 |
GCA_900636545 |
complete |
|
300 tax ID |
* |
[Ref.: #66792] |
Pseudomonas mendocina NBRC 14162 |
GCA_000813265 |
contig |
|
1215108 tax ID |
* |
[Ref.: #66792] |
Pseudomonas mendocina NBRC 14162 |
1215108.3 |
wgs |
|
1215108 tax ID |
* |
[Ref.: #66792] |
Pseudomonas mendocina strain NCTC10897 |
300.59 |
complete |
|
300 tax ID |
* |
[Ref.: #66792] |
Pseudomonas mendocina NBRC 14162 |
2627854063 |
draft |
|
1215108 tax ID |
* |
|
|
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Availability in culture collections External links
[Ref.: #12606] |
Culture collection no. |
DSM 50017, ATCC 25411, CCUG 1781, CCUG 12440, JCM 5966, BCRC 10458, CCM 3590, CECT 320, CGMCC 1.1804, CIP 75.21, ICPB 3725, IFO 14162, LMG 1223, NBRC 14162, NCIMB 10541, NCTC 10897, VKM B-972, VTT E-99945, IMET 11176 |
[Ref.: #82078] |
SI-ID 4159
|
* |
|
Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
|
Topic |
Title |
Authors |
Journal |
DOI |
Year |
|
Phylogeny |
Arsenic Resistance Mechanisms in Pseudomonas mendocina SMSKVR-3 Strain Isolated from Khetri Copper Mines, Rajasthan, India. |
Mishra S, Kumar S, Verma SK |
Curr Microbiol |
10.1007/s00284-021-02749-6 |
2022 |
* |
Phylogeny |
Pseudomonas hydrolytica sp. nov., multiple polymer-degrading bacteria isolated from soil in China. |
Zhou S, Wang Y, Xia H, Liu D, Chen S, Li F |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004129 |
2020 |
* |
Phylogeny |
Pseudomonas guguanensis sp. nov., a gammaproteobacterium isolated from a hot spring. |
Liu YC, Young LS, Lin SY, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC |
Int J Syst Evol Microbiol |
10.1099/ijs.0.047712-0 |
2013 |
* |
Phylogeny |
Pseudomonas tuomuerensis sp. nov., isolated from a bird's nest. |
Xin YH, Zhang DC, Liu HC, Zhou HL, Zhou YG |
Int J Syst Evol Microbiol |
10.1099/ijs.0.000547-0 |
2009 |
* |
Metabolism |
Comparison of aspartate transcarbamoylase regulation in Pseudomonas alcaligenes and Pseudomonas mendocina. |
Santiago MF, West TP |
J Basic Microbiol |
10.1002/jobm.200390008 |
2003 |
* |
|
Class II LitR serves as an effector of "short" LOV-type blue-light photoreceptor in Pseudomonas mendocina. |
Maruyama T, Sumi S, Kobayashi M, Ebuchi T, Kanesaki Y, Yoshikawa H, Ueda K, Takano H |
Sci Rep |
10.1038/s41598-022-26254-3 |
2022 |
* |
|
- References
-
#12606 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 50017
|
-
-
-
#35027 |
; Curators of the CIP;
|
-
#44420 |
Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG;
CCUG 1781
|
-
-
#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
|
-
#68369 |
Automatically annotated from API 20NE .
|
-
#68382 |
Automatically annotated from API zym .
|
-
-
#82078 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
.
(
DOI 10.60712/SI-ID4159.1 )
|
-
#120892 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 75.21
|
- * These data were automatically processed and therefore are not curated
Change proposal
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