Name: Alteromonas nigrifaciens DB 574
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12685

Type strain:

Species: Alteromonas nigrifaciens

Strain Designation: DB 574

Culture col. no.: CCUG 2085, NCTC 10691, ATCC 23327, DSM 8810, ATCC 19375, DSM 6063, NCDO 755, NCIB 8614, JCM 20792, CCUG 16154, CIP 104111, IAM 13010, KMM 661, LMG 2227, NBRC 103036, NCIMB 8614

Strain history: CIP <- 1994, NCIMB <- Div. Bact. Dairy Res., Ottawa, Canada <- A.H. White: strain DB 574, Pseudomonas nigrifaciens

NCBI tax ID(s): 28109 (species)

SI-ID 871

LMG 2227, ATCC 19375, ATCC 23327, CCUG 16154, IAM 13010, NCDO 755, NCIB 8614, NCTC 10691, DSM 6063, DSM 8810, CCUG 2085, CIP 104111, NCIMB 8614, JCM 20792, NBRC 103036

Other strains from Alteromonas nigrifaciens

A. nigrifaciens DSM 9416, IMG 2228, ATCC 25013, ...

Section

Alteromonas nigrifaciens DB 574 is a mesophilic, motile bacterium that was isolated from butter.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Alteromonas*
	Species	**Alteromonas nigrifaciens**
	Full Scientific Name (LPSN)	Alteromonas nigrifaciens (ex White 1940) Baumann et al. 1984

Synonym

Pseudoalteromonas nigrifaciens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #69480]	Motility	yes Confidence in %98.402

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3411]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #3411]

Culture medium growth

[Ref.: #3411]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3411]

Culture medium composition

expand / minimize

[Ref.: #3411]

Culture medium

NUTRIENT AGAR WITH NaCl (DSMZ Medium 101)

[Ref.: #3411]

Culture medium growth

[Ref.: #3411]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3411]

Culture medium composition

expand / minimize

[Ref.: #42027]

Culture medium

Marine agar (MA)

[Ref.: #42027]

Culture medium growth

[Ref.: #42027]

Culture medium composition

expand / minimize

[Ref.: #121298]

Culture medium

CIP Medium 13

[Ref.: #121298]

Culture medium growth

[Ref.: #121298]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3411]	growth	26 °C
[Ref.: #42027]	growth	22 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #3411]	Temperature range	mesophilic
[Ref.: #42027]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.969

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3411]	Sample type/isolated from	butter

[Ref.: #44480]	Sample type/isolated from	Salted butter showing black discolouration

[Ref.: #67770]	Sample type/isolated from	Moderately salted butter

[Ref.: #121298]	Sample type/isolated from	Salted butter showing black discoloration
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3411]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121298]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudoalteromonas nigrifaciens gene for 16S rRNA, partial sequence	D11173	217	ENA	28109 tax ID	*
[Ref.: #20218]	Alteromonas nigrifaciens 16S rRNA	D11222	206	ENA	28109 tax ID	*
[Ref.: #20218]	Alteromonas nigrifaciens 16S rRNA	D11271	196	ENA	28109 tax ID	*
[Ref.: #20218]	Pseudoalteromonas nigrifaciens gene for 16S rRNA, partial sequence, strain: NBRC 103036	AB681916	1461	ENA	28109 tax ID	*
[Ref.: #20218]	A.nigrifaciens 16S rRNA gene (NCIMB 8614T)	X82146	1436	ENA	28109 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas nigrifaciens KMM 661	2791355162	complete	JGI IMG/M	1315278 tax ID	*
[Ref.: #66792]	Pseudoalteromonas nigrifaciens NCTC10691	GCA_900455185	contig	GenBank	28109 tax ID	*
[Ref.: #66792]	Pseudoalteromonas nigrifaciens NBRC 103036	GCA_007991255	contig	GenBank	28109 tax ID	*
[Ref.: #66792]	Pseudoalteromonas nigrifaciens strain KMM 661	28109.6	plasmid	PATRIC	28109 tax ID	*
[Ref.: #66792]	Pseudoalteromonas nigrifaciens strain KMM 661	28109.4	complete	PATRIC	28109 tax ID	*
[Ref.: #66792]	Pseudoalteromonas nigrifaciens strain NBRC 103036	28109.12	wgs	PATRIC	28109 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas nigrifaciens KMM 661 NCBI: GCA_002221505.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas nigrifaciens KMM 661 NCBI: GCA_002221505.1
[Ref.: #69480]	flagellated	yes	84.579	no
[Ref.: #69480]	gram-positive	no	98.875	no
[Ref.: #69480]	anaerobic	no	97.443	no
[Ref.: #69480]	aerobic	yes	92.452	no
[Ref.: #69480]	halophile	no	57.824	no
[Ref.: #69480]	spore-forming	no	94.929	no
[Ref.: #69480]	thermophile	no	99.018	no
[Ref.: #69480]	glucose-util	yes	90.981	no
[Ref.: #69480]	motile	yes	88.463	no
[Ref.: #69480]	glucose-ferment	no	76.854	no

Availability in culture collections External links

[Ref.: #3411]

Culture collection no.

CCUG 2085, NCTC 10691, ATCC 23327, DSM 8810, ATCC 19375, DSM 6063, NCDO 755, NCIB 8614, JCM 20792, CCUG 16154, CIP 104111, IAM 13010, KMM 661, LMG 2227, NBRC 103036, NCIMB 8614

[Ref.: #81897]

SI-ID 871

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.	Al Khudary R, Stosser NI, Qoura F, Antranikian G	Int J Syst Evol Microbiol	10.1099/ijs.0.64963-0	2008	*
Genetics	Structure of the capsular polysaccharide from Alteromonas nigrifaciens IAM 13010T containing 2-acetamido-2,6-dideoxy-L-talose and 3-deoxy-D-manno-octulosonic acid.	Gorshkova RP, Nazarenko EL, Zubkov VA, Shashkov AS, Knirel YA, Paramonov NA, Meshkov SV, Ivanova EP	Carbohydr Res	10.1016/s0008-6215(96)00339-4	1997	*

References

#3411

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8810

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42027 ; Curators of the CIP;
#44480 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2085

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81897

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID871.1 )

#121298 Collection of Institut Pasteur ; Curators of the CIP; CIP 104111
* These data were automatically processed and therefore are not curated

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Pseudoalteromonas nigrifaciens KMM 661

Pseudoalteromonas nigrifaciens KMM 661

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