Name: Methylophaga thalassica DSM 5690
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11904

Type strain:

Species: Methylophaga thalassica

Culture col. no.: DSM 5690, ATCC 33146, IAM 12458, LMG 4055, NCIMB 2163, JCM 6887, CIP 104552, KCTC 2861, NBRC 102424, VKM B-2057

Strain history: CIP <- 1995, M. Janvier and F. Gasser, Inst. Pasteur, Paris, France <- NCIMB, "Methylomonas thalassica" <- K. Kouno

NCBI tax ID(s): 40223 (species)

SI-ID 3573

LMG 4055, ATCC 33146, IAM 12458, NCMB 2163, CIP 104552, JCM 6887, NCIMB 2163, DSM 5690, VKM B-2057, KCTC 2861, NBRC 102424

Other strains from Methylophaga thalassica

M. thalassica CIP 104726, ATCC 33145, IAM 12457, ...
M. thalassica CIP 104563, LMG 2878, NCIMB 2160
M. thalassica 150, CIP 104564
M. thalassica 1d, CIP 104565
M. thalassica FERMP-3622, CIP 106896, NCIMB 2162, ...
M. thalassica DSM 9438, FERM P-4515, IAM 12459, ...

Section

Methylophaga thalassica DSM 5690 is a mesophilic bacterium that was isolated from seawater.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Piscirickettsiaceae*
	Genus	*Methylophaga*
	Species	**Methylophaga thalassica**
	Full Scientific Name (LPSN)	Methylophaga thalassica Janvier et al. 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2287]

Culture medium

MEDIUM FOR MARINE METHYLOTROPHS (DSMZ Medium 750)

[Ref.: #2287]

Culture medium growth

[Ref.: #2287]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2287]

Culture medium composition

expand / minimize

[Ref.: #39039]

Culture medium

MEDIUM 138 - for Methylophaga thalassica and Methylophaga marina

[Ref.: #39039]

Culture medium growth

[Ref.: #39039]

Culture medium composition

expand / minimize

[Ref.: #123498]

Culture medium

CIP Medium 138

[Ref.: #123498]

Culture medium growth

[Ref.: #123498]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2287]	growth	25-30 °C
[Ref.: #39039]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2287]	Temperature range	mesophilic
[Ref.: #39039]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2287]	Sample type/isolated from	seawater
[Ref.: #2287]	Geographic location (country and/or sea, region)	Kanagawa Prefecture
[Ref.: #2287]	Country	Japan
[Ref.: #2287]	Country ISO 3 Code	JPN
[Ref.: #2287]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coastal seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #123498]	Sample type/isolated from	Environment, Coastal sea water
[Ref.: #123498]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #123498]	Country	Japan
[Ref.: #123498]	Country ISO 3 Code	JPN
[Ref.: #123498]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X87339 (>99% sequence identity) for Methylophaga thalassica from Microbeatlas

Aquatic Samples	189
Soil Samples	9
Animal Samples	14
Plant Samples
Total Samples	212

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2287]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123498]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	M.thalassica DNA for 16S ribosomal RNA (ATCC 33146)	X87339	1489	ENA	40223 tax ID	*
[Ref.: #20218]	M.thalassica mRNA for 16S ribosomal RNA	X95460	1491	ENA	40223 tax ID	*
[Ref.: #20218]	Methylophaga thalassica gene for 16S rRNA, partial sequence, strain: NBRC 102424	AB681780	1463	ENA	40223 tax ID	*

[Ref.: #67770]	GC-content	44.9 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	44 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	43.8 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #2287]

Culture collection no.

DSM 5690, ATCC 33146, IAM 12458, LMG 4055, NCIMB 2163, JCM 6887, CIP 104552, KCTC 2861, NBRC 102424, VKM B-2057

[Ref.: #81119]

SI-ID 3573

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of the recombinant diaminobutyric acid acetyltransferase from Methylophaga thalassica and Methylophaga alcalica.	Mustakhimov II, Rozova ON, Reshetnikov AS, Khmelenina VN, Murrell JC, Trotsenko YA	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01156.x	2008	*

References

#2287

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5690

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39039 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81119

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3573.1 )

#123498 Collection of Institut Pasteur ; Curators of the CIP; CIP 104552
* These data were automatically processed and therefore are not curated

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