Name: Mesorhizobium thiogangeticum SJT
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11890

Type strain:

Species: Mesorhizobium thiogangeticum

Strain Designation: SJT

Culture col. no.: DSM 17097, LMG 22697, MTCC 7001, CIP 109173

Strain history: CIP <- 2006, MTCC

NCBI tax ID(s): 302401 (species)

SI-ID 135990

LMG 22697, DSM 17097, CIP 109173

Section

Mesorhizobium thiogangeticum SJT is an aerobe, mesophilic, Gram-negative bacterium that was isolated from rhizosphere soil of the Indian tropical leguminous plant Clitoria ternatea.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium thiogangeticum**
	Full Scientific Name (LPSN)	Mesorhizobium thiogangeticum Ghosh and Roy 2006

Information on morphological and physiological properties Morphology

[Ref.: #31651]	Gram stain	negative
[Ref.: #123522]	Gram stain	negative

[Ref.: #31651]	Cell length	1.2-1.5 µm

[Ref.: #31651]	Cell width	0.2-0.4 µm

[Ref.: #31651]	Cell shape	rod-shaped
[Ref.: #123522]	Cell shape	rod-shaped

[Ref.: #123522]	Motility	no

[Ref.: #31651]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6758]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #6758]

Culture medium growth

[Ref.: #6758]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6758]

Culture medium composition

expand / minimize

[Ref.: #34018]

Culture medium

MEDIUM 368 - for Luria bertani

[Ref.: #34018]

Culture medium growth

[Ref.: #34018]

Culture medium composition

expand / minimize

[Ref.: #6758]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #6758]

Culture medium growth

[Ref.: #6758]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6758]

Culture medium composition

expand / minimize

[Ref.: #123522]

Culture medium

CIP Medium 368

[Ref.: #123522]

Culture medium growth

[Ref.: #123522]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6758]	growth	28 °C
[Ref.: #31651]	growth	30-37 °C
[Ref.: #31651]	optimum	30-37 °C
[Ref.: #34018]	growth	30 °C

[Ref.: #6758]	Temperature range	mesophilic
[Ref.: #31651]	Temperature range	mesophilic
[Ref.: #34018]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31651]			optimum	7
[Ref.: #31651]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31651]	Oxygen tolerance	aerobe
[Ref.: #123522]	Oxygen tolerance	obligate aerobe

[Ref.: #31651]

Ability of spore formation

[Ref.: #31651]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31651]	arabinose ChEBI	+	carbon source
[Ref.: #31651]	galactose ChEBI	+	carbon source
[Ref.: #31651]	glucose ChEBI	+	carbon source
[Ref.: #31651]	histidine ChEBI	+	carbon source
[Ref.: #31651]	leucine ChEBI	+	carbon source
[Ref.: #31651]	mannitol ChEBI	+	carbon source
[Ref.: #123522]	nitrate ChEBI	-	reduction
[Ref.: #123522]	nitrite ChEBI	+	reduction
[Ref.: #31651]	succinate ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #123522]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31651]	catalase	+	1.11.1.6
[Ref.: #123522]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123522]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123522]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123522]	11698	-	+	-	+	-	+	+	+	+	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6758]	Sample type/isolated from	rhizosphere soil of the Indian tropical leguminous plant Clitoria ternatea
[Ref.: #6758]	Host species	Clitoria ternatea
[Ref.: #6758]	Geographic location (country and/or sea, region)	Gangetic plains of West Bengal, Kolkata
[Ref.: #6758]	Country	India
[Ref.: #6758]	Country ISO 3 Code	IND
[Ref.: #6758]	Continent	Asia

[Ref.: #123522]	Sample type/isolated from	Environment, Soil, Clitoria ternatea
[Ref.: #123522]	Geographic location (country and/or sea, region)	Gangetic plains
[Ref.: #123522]	Country	India
[Ref.: #123522]	Country ISO 3 Code	IND
[Ref.: #123522]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ864462 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	3
Soil Samples	9
Animal Samples	6
Plant Samples	5
Total Samples	23

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6758]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123522]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6758]	Mesorhizobium thiogangeticum 16S rRNA gene, type strain SJTT	AJ864462	1411	ENA	302401 tax ID

[Ref.: #6758]	GC-content	59.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31651]	GC-content	59.6 mol%

Availability in culture collections External links

[Ref.: #6758]

Culture collection no.

DSM 17097, LMG 22697, MTCC 7001, CIP 109173

[Ref.: #81107]

SI-ID 135990

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium sediminum sp. nov., isolated from deep-sea sediment.	Yuan CG, Jiang Z, Xiao M, Zhou EM, Kim CJ, Hozzein WN, Park DJ, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001432	2016	*
Phylogeny	Mesorhizobium thiogangeticum sp. nov., a novel sulfur-oxidizing chemolithoautotroph from rhizosphere soil of an Indian tropical leguminous plant.	Ghosh W, Roy P	Int J Syst Evol Microbiol	10.1099/ijs.0.63967-0	2006	*

References

#6758

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17097

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31651

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27933 (see below)

#34018 ; Curators of the CIP;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81107

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID135990.1 )

#123522 Collection of Institut Pasteur ; Curators of the CIP; CIP 109173

#27933

IJSEM 91 2006 ( DOI 10.1099/ijs.0.63967-0 , PubMed 16403872 )

* These data were automatically processed and therefore are not curated

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