Name: Aminobacter aminovorans TK3001
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 11857

Type strain:

Species: Aminobacter aminovorans

Strain Designation: TK3001, TK 3001

Culture col. no.: DSM 7048, ATCC 23314, JCM 7852, NCIB 9039, CCUG 2081, NCTC 2871, LMG 2122, CIP 106737, NCTC 10684, BCRC 15819, CCM 4329, CFBP 6720, IAM 15264, NCCB 26039, NCIMB 9039, VKM B-2058

Strain history: CIP <- 2000, JCM <- T. Urakami, strain TK 3001 <- NCIMB <- LMD <- L. E. den Dooren de Jong

NCBI tax ID(s): 83263 (species)

SI-ID 13573

LMG 2122, ATCC 23314, JCM 7852, NCIB 9039, NCTC 10684, CCUG 2081, NCTC 2871, CIP 106737, DSM 7048, NCIMB 9039, CCM 4329, VKM B-2058, LMD 26.39, NCCB 26039, BCRC 15819, CCRC 15819, KCTC 12448, KCTC 12352, KACC 10888, KACC 11259, IAM 15264, CFBP 6720, ICMP 19884

Other strains from Aminobacter aminovorans

A. aminovorans TE8, DSM 6449
A. aminovorans TE9, DSM 6450
A. aminovorans TE10, DSM 6451
A. aminovorans DSM 10368, ATCC 29600, NCIMB 13986, ...
A. aminovorans NTA, DSM 14059, ATCC 27109
A. aminovorans TE4, DSM 6463
A. aminovorans TE5, DSM 6464
A. aminovorans TE6, DSM 6465
A. aminovorans TE7, DSM 6466

Section

Aminobacter aminovorans TK3001 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from garden soil by enrichment with trimethylamine.

Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Aminobacter*
	Species	**Aminobacter aminovorans**
	Full Scientific Name (LPSN)	Aminobacter aminovorans (den Dooren de Jong 1926) Urakami et al. 1992

	Synonym	Pseudomonas aminovorans
	Synonym	"Aminobacter* heintzii"*
	Synonym	Chelatobacter heintzii

Information on morphological and physiological properties Morphology

[Ref.: #116335]	Gram stain	negative
[Ref.: #116335]	Cell shape	rod-shaped
[Ref.: #116335]	Motility	yes

[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #116335]	Pigment production	no
[Ref.: #116335]	Pigment name	Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2959]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2959]

Culture medium growth

[Ref.: #2959]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2959]

Culture medium composition

expand / minimize

[Ref.: #39567]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #39567]

Culture medium growth

[Ref.: #39567]

Culture medium composition

expand / minimize

[Ref.: #116335]

Culture medium

CIP Medium 328

[Ref.: #116335]

Culture medium growth

[Ref.: #116335]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2959]		growth	30 °C
[Ref.: #39567]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #116335]		growth	25-30 °C
[Ref.: #116335]	no	growth	5 °C
[Ref.: #116335]	no	growth	10 °C
[Ref.: #116335]	no	growth	37 °C
[Ref.: #116335]	no	growth	41 °C

[Ref.: #2959]	Temperature range	mesophilic
[Ref.: #39567]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #116335]	Temperature range	mesophilic
[Ref.: #116335]	Temperature range	psychrophilic
[Ref.: #116335]	Temperature range	mesophilic
[Ref.: #116335]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116335]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Salt	Tested relation		Salt conc.
[Ref.: #116335]	NaCl		growth	0-4	%
[Ref.: #116335]	NaCl	no	growth	6	%
[Ref.: #116335]	NaCl	no	growth	8	%
[Ref.: #116335]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116335]	citrate ChEBI	-	carbon source
[Ref.: #116335]	esculin ChEBI	-	hydrolysis
[Ref.: #116335]	nitrate ChEBI	-	reduction
[Ref.: #116335]	nitrate ChEBI	-	respiration
[Ref.: #116335]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116335]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #116335]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116335]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116335]	amylase	-
[Ref.: #116335]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116335]	caseinase	-	3.4.21.50
[Ref.: #116335]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116335]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116335]	gelatinase	-
[Ref.: #116335]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116335]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116335]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116335]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116335]	oxidase	+
[Ref.: #116335]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116335]	tryptophan deaminase	-
[Ref.: #116335]	tween esterase	-
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116335]	1807	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	+	-	-	-	-	+	+	-	+	+	+	+	-	+	+	-	+	-	-	-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-	-	+	-	-	-	+	-	-	-	+	-	-	+	+	+	-	+	+	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116335]	9766	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2959]	Sample type/isolated from	garden soil by enrichment with trimethylamine

[Ref.: #44478]	Sample type/isolated from	Garden soil by enrichment with trimethylamine 30°C

[Ref.: #67770]	Sample type/isolated from	Garden soil by enrichment with trimethylamine

[Ref.: #116335]	Sample type/isolated from	Environment, Garden soil, enrichment with trimethylamine
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Garden
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ011759 (>99% sequence identity) for Mesorhizobium from Microbeatlas

Aquatic Samples	308
Soil Samples	780
Animal Samples	145
Plant Samples	31
Total Samples	1264

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2959]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116335]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Aminobacter aminovorans strain DSM7048T, 16S rRNA gene, partial	AJ011759	1470	ENA	83263 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aminobacter aminovorans DSM 7048	GCA_004341645	scaffold	GenBank	83263 tax ID
[Ref.: #66792]	Aminobacter aminovorans NCTC10684	GCA_900445235	contig	GenBank	83263 tax ID	*
[Ref.: #66792]	Aminobacter aminovorans strain DSM 7048	83263.12	wgs	PATRIC	83263 tax ID	*
[Ref.: #66792]	Aminobacter aminovorans strain NCTC10684	83263.10	wgs	PATRIC	83263 tax ID	*
[Ref.: #66792]	Aminobacter aminovorans DSM 7048	2784746775	draft	JGI IMG/M	83263 tax ID	*
[Ref.: #66792]	Aminobacter aminovorans NCTC 10684	2808606775	draft	JGI IMG/M	83263 tax ID	*

[Ref.: #67770]

GC-content

62.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aminobacter aminovorans DSM 7048 NCBI: GCA_004341645.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aminobacter aminovorans strain DSM 7048 PATRIC: 83263.12
[Ref.: #69480]	motile	yes	90.437	no
[Ref.: #69480]	flagellated	no	65.476	no
[Ref.: #69480]	gram-positive	no	98.105	no
[Ref.: #69480]	anaerobic	no	99.036	no
[Ref.: #69480]	halophile	no	89.595	no
[Ref.: #69480]	spore-forming	no	95.354	no
[Ref.: #69480]	glucose-util	yes	93.78	no
[Ref.: #69480]	aerobic	yes	94.691	no
[Ref.: #69480]	thermophile	no	97.994	yes
[Ref.: #69480]	glucose-ferment	no	90.055	no

Availability in culture collections External links

[Ref.: #2959]

Culture collection no.

DSM 7048, ATCC 23314, JCM 7852, NCIB 9039, CCUG 2081, NCTC 2871, LMG 2122, CIP 106737, NCTC 10684, BCRC 15819, CCM 4329, CFBP 6720, IAM 15264, NCCB 26039, NCIMB 9039, VKM B-2058

[Ref.: #81075]

SI-ID 13573

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria.	Doronina NV, Kaparullina EN, Trotsenko YA, Nortemann B, Bucheli-Witschel M, Weilenmann HU, Egli T	Int J Syst Evol Microbiol	10.1099/ijs.0.003152-0	2009	*

References

#2959

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7048

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39567 ; Curators of the CIP;
#44478 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2081

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81075

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13573.1 )

#116335 Collection of Institut Pasteur ; Curators of the CIP; CIP 106737
* These data were automatically processed and therefore are not curated

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Aminobacter aminovorans DSM 7048

Aminobacter aminovorans strain DSM 7048

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