Name: Leptospirillum ferriphilum P3A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 10536

Type strain:

Species: Leptospirillum ferriphilum

Strain Designation: P3A, P₃A

Culture col. no.: DSM 14647, ATCC 49881

Strain history: <- N. J. Coram, University of Stellenbosch, Department of Microbiology, Matieland, South Africa; ATCC 49881 <- ATCC <- W. Sand, University Hamburg, Dept. Mikrobiologie, Hamburg, Germany; P₃A

NCBI tax ID(s): 178606 (species)

SI-ID 87760

ATCC 49881, DSM 14647

Section

Leptospirillum ferriphilum P3A is a mesophilic bacterium that was isolated from enrichment culture.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Nitrospirota*
	Class	*Nitrospiria*
	Order	*Nitrospirales*
	Family	*Nitrospiraceae*
	Genus	*Leptospirillum*
	Species	**Leptospirillum ferriphilum**
	Full Scientific Name (LPSN)	Leptospirillum ferriphilum Coram and Rawlings 2002

Information on morphological and physiological properties Morphology

[Ref.: #5461]

Incubation period

8-14 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5461]

Culture medium

LEPTOSPIRILLUM (HH) MEDIUM (DSMZ Medium 882)

[Ref.: #5461]

Culture medium growth

[Ref.: #5461]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5461]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5461]			growth	37 °C

[Ref.: #5461]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5461]	Sample type/isolated from	enrichment culture
[Ref.: #5461]	Geographic location (country and/or sea, region)	Lima
[Ref.: #5461]	Country	Peru
[Ref.: #5461]	Country ISO 3 Code	PER
[Ref.: #5461]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Engineered

#Laboratory

#Lab enrichment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF356829 (>99% sequence identity) for Leptospirillum ferriphilum subclade from Microbeatlas

Aquatic Samples	109
Soil Samples	17
Animal Samples	12
Plant Samples	4
Total Samples	142

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5461]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5461]	Leptospirillum ferriphilum strain ATCC 49881 16S ribosomal RNA gene, partial sequence	AF356829	1516	ENA	178606 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leptospirillum ferriphilum DSM 14647	GCA_000755505	contig	GenBank	178606 tax ID	*
[Ref.: #66792]	Leptospirillum ferriphilum strain DSM 14647	178606.4	wgs	PATRIC	178606 tax ID	*
[Ref.: #66792]	Leptospirillum ferriphilum DSM 14647	2609460196	draft	JGI IMG/M	178606 tax ID	*

[Ref.: #5461]

GC-content

56.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leptospirillum ferriphilum strain DSM 14647 PATRIC: 178606.4
[Ref.: #69480]	motile	yes	85.244	no
[Ref.: #69480]	gram-positive	no	98.82	no
[Ref.: #69480]	anaerobic	no	68.554	no
[Ref.: #69480]	aerobic	no	81.227	no
[Ref.: #69480]	halophile	no	92.327	no
[Ref.: #69480]	spore-forming	no	88.606	no
[Ref.: #69480]	thermophile	yes	70.464	yes
[Ref.: #69480]	glucose-util	yes	53.49	no
[Ref.: #69480]	flagellated	no	86.471	no
[Ref.: #69480]	glucose-ferment	no	82.415	no

Availability in culture collections External links

[Ref.: #5461]

Culture collection no.

DSM 14647, ATCC 49881

[Ref.: #79812]

SI-ID 87760

Literature:

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Transcriptomic analysis of chloride tolerance in Leptospirillum ferriphilum DSM 14647 adapted to NaCl.	Rivera-Araya J, Heine T, Chavez R, Schlomann M, Levican G	PLoS One	10.1371/journal.pone.0267316	2022	*
Stress	Osmotic Imbalance, Cytoplasm Acidification and Oxidative Stress Induction Support the High Toxicity of Chloride in Acidophilic Bacteria.	Rivera-Araya J, Pollender A, Huynh D, Schlomann M, Chavez R, Levican G	Front Microbiol	10.3389/fmicb.2019.02455	2019	*
Metabolism	Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilum(T).	Christel S, Herold M, Bellenberg S, El Hajjami M, Buetti-Dinh A, Pivkin IV, Sand W, Wilmes P, Poetsch A, Dopson M	Appl Environ Microbiol	10.1128/AEM.02091-17	2018	*
Genetics	Draft Genome Sequence of the Iron-Oxidizing Acidophile Leptospirillum ferriphilum Type Strain DSM 14647.	Cardenas JP, Lazcano M, Ossandon FJ, Corbett M, Holmes DS, Watkin E	Genome Announc	10.1128/genomeA.01153-14	2014	*
Metabolism	Thiol/Disulfide system plays a crucial role in redox protection in the acidophilic iron-oxidizing bacterium Leptospirillum ferriphilum.	Norambuena J, Flores R, Cardenas JP, Quatrini R, Chavez R, Levican G	PLoS One	10.1371/journal.pone.0044576	2012	*

References

#5461

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14647

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#79812

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87760.1 )

* These data were automatically processed and therefore are not curated

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Leptospirillum ferriphilum strain DSM 14647

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